IncidencePrevalence1.2.1 package

Estimate Incidence and Prevalence using the OMOP Common Data Model

asIncidenceResult

A tidy implementation of the summarised_result object for incidence re...

asPrevalenceResult

A tidy implementation of the summarised_result object for prevalence r...

availableIncidenceGrouping

Variables that can be used for faceting and colouring incidence plots

availablePrevalenceGrouping

Variables that can be used for faceting and colouring prevalence plots

benchmarkIncidencePrevalence

Run benchmark of incidence and prevalence analyses

estimateIncidence

Collect population incidence estimates

estimatePeriodPrevalence

Estimate period prevalence

estimatePointPrevalence

Estimate point prevalence

generateDenominatorCohortSet

Identify a set of denominator populations

generateTargetDenominatorCohortSet

Identify a set of denominator populations using a target cohort

IncidencePrevalence-package

IncidencePrevalence: Estimate Incidence and Prevalence using the OMOP ...

mockIncidencePrevalence

Generate example subset of the OMOP CDM for estimating incidence and p...

optionsTableIncidence

Additional arguments for the functions tableIncidence.

optionsTablePrevalence

Additional arguments for the functions tablePrevalence.

pipe

Pipe operator

plotIncidence

Plot incidence results

plotIncidencePopulation

Bar plot of denominator counts, outcome counts, and person-time from i...

plotPrevalence

Plot prevalence results

plotPrevalencePopulation

Bar plot of denominator and outcome counts from prevalence results

reexports

Objects exported from other packages

tableIncidence

Table of incidence results

tableIncidenceAttrition

Table of incidence attrition results

tablePrevalence

Table of prevalence results

tablePrevalenceAttrition

Table of prevalence attrition results

Calculate incidence and prevalence using data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model. Incidence and prevalence can be estimated for the total population in a database or for a stratification cohort.

  • Maintainer: Edward Burn
  • License: Apache License (>= 2)
  • Last published: 2025-07-22