Estimation of Jacquard's Genetic Identity Coefficients
Boxplots of Jacquard Coefficients
Boxplots of Relateness parameters
Calculate Moment Estimators for Relatedness Parameters
Calculate Relatedness Paramenters from Jacquard Coefficients tA Capita...
Extract estimates of Jacquard coefficients for a given pair
Estimation of Jacquard coefficients by Constrained Least Squares
Calculate joint pairwise Genotype Counts
Calculate the Minor Allele Frequency (MAF) for a matrix with (0,1,2) g...
Create matrix of conditional joint genotype probabilities
Create a Pairwise List of Jacquard Coefficients
Contains procedures to estimate the nine condensed Jacquard genetic identity coefficients (Jacquard, 1974) <doi:10.1007/978-3-642-88415-3> by constrained least squares (Graffelman et al., 2024) <doi:10.1101/2024.03.25.586682> and by the method of moments (Csuros, 2014) <doi:10.1016/j.tpb.2013.11.001>. These procedures require previous estimation of the allele frequencies. Functions are supplied that estimate relationship parameters that derive from the Jacquard coefficients, such as individual inbreeding coefficients and kinship coefficients.