An Interface for Microclimate Time Series Analysis
aboutKTS: opens information file about KarsTS version
aggregateKTS: creation of time series of aggregated values
anaSamper: analyzing sampling periods and gaps
applyGap2TSer: apply a gap set to a time series
applyTheiler: apply Theiler's window
are2TsTimeCompatible: test time compatibility between two time series
areTsGapTimeCompatible: tests time compatibility between a time series...
areTsRmTimeCompatible: test time compatibility between a time series a...
arimaKalman: ARIMA + Kalman smoother
arimaXKalman: ARIMAX + Kalman smoother
assignMultiple: assign multiple
buttons1: create the buttons corresponding to the Time Series Menu
buttons2: create the buttons corresponding to the Gap Sets Menu
buttons3: create the buttons corresponding to the Analysis Menu
buttons4: create the buttons corresponding to the Plots Menu
buttons5: create the buttons corresponding to the Filling Menu
checkIfAny: check if there are any data sets in the environment
checkIfAny: check if there are any time series or gap sets in the envi...
checkIfAny: check if there are any time series and gap sets in the env...
checkIfAny: check if there is some recurrence matrix in the environmen...
checkIfAnyRmTs: check if there is some recurrence matrix and some time...
checkIfAnyTs: check if there is some time series in the environment
cleanEnvir: removes a list of variables from KTSEnv
compareVecVec: compare the elements of two vectors
composeKTS: perform operations on time series
createChb: creates a check box on the main screen
createChbChb: two column check box
createChbEntry: creates a check box with associated text entries
createCrossRM: creates a cross recurrence matrix
createCrossRMPlot: creates a cross recurrence plot
createDistMatrix: creates distance matrix
createEachRb: creates a radiobutton on the main screen
createChb: creates a text entry on the main screen
createFAN: creates a fixed amount of neighbors (FAN) matrix.
createFANplot: creates a plot from a fixed amount of neighbors (FAN) r...
createGapChb: creates a check box of gap sets
createGapRb: creates a radio button of gap sets
createJointRM: creates a joint recurrence matrix
createJointRMPlot: creates a cross recurrence plot
createNote: creates a note on the input panel
createOK: creates the OK or NEXT button on the input panel
createRandGaps: create random gaps in a time series
createRandName: creates a random name
createRb: creates a radio button
createRmChb: creates a check box of recurrence matrices
createRmRb: creates a radiobutton of recurrence matrices
createSimpleRM: creates a recurrence matrix
createSimpleRMPlot: creates a recurrence plot
createSpecGaps: creates a specific gap in a time series
createSubPanR4C1: creates the input panel on the main screen
createTitle: creates a title in the input panel
createTITLE: create a title on the input panel
createTsChb: creates a check box of time series
createTsRb: creates a radiobutton of time series
cumuKTS: creates a cumulated time series
A function to destroy KarsTS main screen
destroyWelcome: destroys KarsTS welcome screen
determinismKTS: estimate determinism
diffKTS: calculate differences of a time series
E1dAndE2d: invariants E1(d) and E2(d)
embedData: embeds a time series
endingLines: add three lines of asterisks on the output panel
exportall: exports all types of data sets
fillWithTwins: fills missing values using twin points
findDateFormat: finds the format of a set of dates
findTwins: finds twin points in a recurrence matrix
fnn: plots embedding dimendion vs false nearest neighbors
functToExport: functions to export
A function to fill values by means of a generalized additive model
gapCheckedTF: identifies checked gap sets
gapDetect: identifies the gap sets currently loaded
gapForSelMethod: gap set to fill
A function to generate a gap set example
A function to generate a recurrence matrix example
A function to generate an example time series
getClassEnvir: get objects of a class from an environment
getCoordsKTS: get coordinates from a plot
getCRP: gets the correlation probability of recurrence
getDelayCharTimes: transforms dates from character to numeric.
getFANRM2: creates a fixed amount of neighbours (FAN) matrix via conso...
getGapsAfterFill: get the remaining gaps
getMaxNegSlope: get the maximum negative slope
getMaxPosSlope: get the maximum negative slope
getNAsGaps: get the gaps in a time series
A function to create random gaps
getOtherErrEstim: get some error estimates from a linear fit
getProTaos:calculate the probability of recurrence
A function to get recurrent points in a time series
getRollStatistics: get rolling statistics It is used internally
getSamPerTable.1Freq: get sampling periods table (time series with one...
getSamPerTable: get sampling periods table
getScreenSize: gets the computer screen size
getStatistics: calculates the statistics of a time series
getUniqueSampPer: get unique sampling periods
goodnessFilling: estimate the goodness of the filling
groupDates: groups dates
groupIndices: group indices
histKTS: plots histogram
invariantsKTS: invariant plots
isTimeAlright: checks whether a set of dates fits KarsTS format
tools:::Rd_package_title("KarsTS")
KarsTS: launches KarsTS
laminarityKTS: estimate laminarity
linCorrKTS: linear correlation plot
linearityKTS: linearity tests
loadAllTypes: load all types of data sets
loadKarsTSFonts: load KarsTS fonts
loess: loess smoothing
mainScreen: launches the main screen
meanValue: mean value filling
mergeTsOrGap: merges time series or gap sets
missForestKTS: filling missing values with random forest algorithm
modeKTS: computes the mode
mutInf: mutual information
mutualKTS: plots the mutual information
myApplyVector: apply type function
myLinModel: performs a linear fit
myScale: scaling function
naApproxKTS: filling by linear interpolation
NAs4Resamp: upsamples a time series.
naSplinesKTS: filling by spline interpolation
normalityKTS: normality tests
packagesToImport: packages to import to KarsTS
pcaKTS: principal component analysis
plotTimeSeries: plot time series
readMultEntryvalues: verifies multiple entry values
refreshDataSetsList: refreshes KarsTS data set list
removeAllTypes: removes data sets
removeIfExists: remove if exists
removePoints: graphically remove points from a time series
renameAllTypes: rename all types of data sets
rmCheckedTF: identifies checked recurrence matrices
rmDetect: identifies the recurrence matrices currently loaded
rmSlopeOutliers: slope filter
rollStatisticsKTS: rolling statistics
roundKTS: rounding
Recurrence of probability
saveAllTypes: saves all types of data sets.
saveReport: saves report
scaleKTS: scale time series
A function for plotting time series in the phase space
selectionGaps: select gaps in a time series
selectionTS
separateEntry: separates and checks comma-separated entry values
setCorrectDate: verifies date entry and returns proper output
setwdKTS: set working directory
showHelp: shows KarsTS help
slopeOutliersBut: remove slope outliers
stationarityKTS: stationarity tests
statisticsKTS: calculates the statistics of one or more time series
stinemannKTS: filling by Stinemann's interpolation
stlplusKTS: loess seasonal decomposition
theilerKTS: apply Theiler's window via interface
tsCheckedTF: identifies checked time series
tsDetect: identifies the time series currently loaded
verifyCharEntry: verify character entries
verifyDateEntry: verify date entries
verifyIntEntry: verify integer entries
verifyRealEntry: verify character entries
welcomeScreen: launches the welcome screen
windRoseKTS: wind rose
writeMethodSummary: writes a summary of the filling method
writeMethodTitle: writes a title on KarsTS output window
An R code with a GUI for microclimate time series, with an emphasis on underground environments. 'KarsTS' provides linear and nonlinear methods, including recurrence analysis (Marwan et al. (2007) <doi:10.1016/j.physrep.2006.11.001>) and filling methods (Moffat et al. (2007) <doi:10.1016/j.agrformet.2007.08.011>), as well as tools to manipulate easily time series and gap sets.