LDLcalc2.1 package

Calculate and Predict the Low Density Lipoprotein Values

AIP_DensityPlotOfbootst

Plot density of bootstrap and empirical variance for AIP

AIP_HDLVrnc

Calculate the variance of AIP when HDL changes.

AIP_TGVrnc

Calculate the variance of AIP when TG changes.

AIPbootVrnc

Calculate variance of AIP using Bootstrapping.

AIPcalc

Calculation of Atherogenic Index of Plasma (AIP)

AIPErrPrp

Variance of Atherogenic Index of Plasma (AIP) using Error Propagation.

AIPErrPrp2Ord

Second Order Taylor expansion AIP Error propagation variance

chebyshev

Chebysev's inequality

Corr_Plot

Correlation plot

CV

Calculate the CV of a set of values.

CV_Range

Change variance of distribution while keeping the mean constant

DensityPlotOfVar

Plot variance density

ErrorCorCov

Calculate correlation and covariance of residuals

JSD

Calculate the Jensen-Shannon divergence (JSD)

JSDNormal

Calculate the Jensen-Shannon divergence (JSD) between a discrete empir...

LDL_CHOLVrnc

Calculate LDL variance when cholesterol variance changes

LDL_DensityPlotOfbootst

Plot density of bootstrap and empirical variance for LDL

LDL_eq

Calculates and returns the LDL Value for any of the 12 different equat...

LDL_HDLVrnc

Calculate LDL variance when HDL variance changes

LDL_ML_Main

Create, train, assess and return an ML prediction model.

LDL_ML_Main_All_Models

Create, train, assess and return all ML prediction models

LDL_ML_Main_StackingAlgorithm

Create, train, assess and return a Stacking Algorithm Machine Learning...

LDL_ML_predict

Predict LDL value(s)

LDL_TGVrnc

Calculate LDL variance when triglyceride variance changes

LDLallEq

Calculates and returns the LDL values using all available equations

LDLbootVrnc

Calculate variance of LDL using bootstrapping.

LDLErrPrp

Calculate LDL variance using error propagation

plotAIP_HDLVrnc

Plots AIP variance versus increasing HDL variance

plotAIP_TGVrnc

Plots AIP variance versus increasing triglyceride variance

plotCholVrncToLDL

Plots LDL variance versus increasing cholesterol variance

PlotCorrWithRegrLine

Scatterplot of pairs of parameters

PlotDiscrHist

Plot discrete histogram

plotHDLVrncToLDL

Plots LDL variance versus increasing HDL variance

plotTGVrncToLDL

Plots LDL variance versus increasing triglyceride variance

A wide variety of ways to calculate (through equations) or predict (using 9 Machine learning methods as well as a stack algorithm combination of them all) the Low Density Lipoprotein values of patients based on the values of three other metrics, namely Total Cholesterol , Triglycerides and High Density Lipoprotein. It can also calculate the variance of LDL and the Atherogenic Index of Plasma (AIP) using error propagation and bootstrapping.

  • Maintainer: Petros Paplomatas
  • License: GPL-3
  • Last published: 2024-02-11