Data Visualisation on 'Lifemap' Tree
Represent data on a Lifemap basemap.
Reports whether x is a lifemap_obj object.
Reports whether x is a lm_branches object.
Reports whether x is a lm_markers object.
Reports whether x is a lm_branches object.
Initialise a new Lifemap visualisation.
Method to print lifemap_obj objects.
Compute the different display options.
Compute the aesthetics for a subtree visualisation.
Compute the aesthetics for markers visualisation.
Compute the aesthetics for discret values visualisation.
A function to construct a LifemapR object, usable by the other functio...
Create a dataframe for the ancestry.
Compute a new scale for a value
Create a Lifemap base.
Add a "branches" layer to a lifemap_obj object.
add a "markers" layer to a lifemap_obj object.
Add a "piecharts" layer to a lifemap_obj object.
Create a newick for the given dataset.
Infer discret values to nodes for lm_piecharts function.
Infer numerical values to nodes.
Add a graphical element to a tree visualisation.
Allow to visualise data on the NCBI phylogenetic tree as presented in Lifemap <http://lifemap.univ-lyon1.fr/>. It takes as input a dataframe with at least a "taxid" column containing NCBI format TaxIds and allows to draw multiple layers with different visualisation tools.
Useful links