Integration and Analysis of Chromatin Loop Data
Subset an object of class LoopRanges using consensus options
Drop loops from LoopRanges objects using anchor and loop sizes
Create a list of ranges objects from element data
Export a LoopRanges or italicsElementRanges object to a BED/BEDPE ...
Determines elements linked by loop anchors
Create a list of ranges objects from looping data
Finds elements within loops scaffolded by another set of elements
Finds elements stacked atop loop anchors
Common coordinate-based workflows involving processed chromatin loop and genomic element data are considered and packaged into appropriate customizable functions. Includes methods for linking element sets via chromatin loops and creating consensus loop datasets.