A Pipeline for Meta-Genome Wide Association
Main OrthoMCL Analysis
Show Principal Components Breakdown
Format file from output of OrthoMCL algorithm before use in AnalyzeOrt...
Format all raw GenBank fastas to single OrthoMCL compatible fasta file
Join Representative Sequences
Manhattan Plot of All Taxa
Plot of a PDG and Data with Standard Error Bars
Number of PDGs vs OGs/PDG
Phylogenetic Tree with Attached Bar Plot and Standard Error Bars
Print OG Sequences
QQPlot
Write RAST files to Genbank formats OrthoMCL Analysis
Append Survival Test Outputs
Print analyzed matrix
Correlates variation within the meta-genome to target species phenotype variations in meta-genome with association studies. Follows the pipeline described in Chaston, J.M. et al. (2014) <doi:10.1128/mBio.01631-14>.