MALDIquant-defunct function

Removed Functions/Methods in Package MALDIquant

These functions/methods are removed.

Details

• plotImsSlice: use plotMsiSlice

   instead.
  

• totalIonCurrent: signature(object = "MassPeaks"): removed.

• totalIonCurrent<-: signature(object = "AbstractMassObject", value = "numeric"): use calibrateIntensity instead.

• calibrate: signature(x = "matrix"): use calibrateIntensity instead.

• standardizeTotalIonCurrent: signature(object = "list"): use calibrateIntensity instead.

• ltrim: signature(object = "AbstractMassObject", minMass = "numeric"): use trim instead.

• rtrim: use trim instead.

• mergeMassSpectra: use averageMassSpectra

   instead.
  

• movingAverage: use smoothIntensity

   instead.
  

• savitzkyGolay: use smoothIntensity

   instead.
  

• isMassObject: removed.

• isMassObjectList: removed.

• intensityMatrix: does not support MassSpectrum objects anymore.