MALDI Mass Spectrometry Data Robust Pre-Processing and Analysis
Add metadata to AbstractMassObject class objects
Compact peak alignment process for MassPeaks objects
Count the number of peaks in MassPeaks objects
Delete peaks from a MassPeaks objects
Detection of outlying mass peak profiles
Convert mass spectra from text files into MassSpectrum objects
MALDI mass spectra robust pre-processing and analysis
Display peak presence/absence patterns
Graphical summary of screenSpectra objects
Create list of MassPeaks objects
Create list of MassSpectrum objects
Reduce resolution of MassSpectrum objects
Identification of potentially low-quality raw mass spectra
Extract signal-to-noise ratio thresholds from MassPeaks objects
Numerical summary of screenSpectra objects
Summary of mass peak profiles
Summary of mass spectra
Transform intensity of MassSpectrum objects
Discrete wavelet transformation for MassSpectrum objects
Write intensity matrix in different formats
Write metadata in different formats
Provides methods for quality control and robust pre-processing and analysis of MALDI mass spectrometry data (Palarea-Albaladejo et al. (2018) <doi:10.1093/bioinformatics/btx628>).