dssp_ts function

DSSP timeseries plot for secondary structure elements (proteins)

Plots time-series for secondary structure motifs in the context of the widely used DSSP algorithm. The default order is: "3-Helix", "4-Helix", "5-Helix", "Bend", "Beta-Bridge", "Beta-Strand", "Turn".

dssp_ts( tsData,
         printLegend = TRUE,
         timeBoundaries = NA,
         residueBoundaries = NA,
         timeUnit = NA,
         snapshotsPerTimeInt = 1000,
         barScaleFactor = 0.25,
         barePlot = FALSE,
         ... )

Arguments

• tsData: List consisting of lists, which are composed of a name (string) and a values table (x ... snapshots, y ... residues). Can be generated by load_dssp_ts().
• printLegend: If TRUE, a legend is printed on the right hand side of the plot.
• timeBoundaries: A vector of boundaries for the time in snapshots.
• residueBoundaries: A vector of boundaries for the residues.
• timeUnit: If set, the snapshots are transformed into the respective time (depending on parameter snapshotsPerTime).
• snapshotsPerTimeInt: Number of snapshots per respective timeUnit (only used when timeUnit is set).
• barScaleFactor: Allows to manually overwrite the height of the bars.
• barePlot: Boolean, indicating whether the plot is to be made without any additional information.
• ...: Additional arguments (ellipsis).

Returns

This function does not return data.

Examples

# GROMOS (see load_dssp_ts() for other input possibilities)
dssp_ts( load_dssp_ts( system.file( "extdata/dssp_ts_example",
                                    package = "MDplot" ) ) )

Author(s)

Christian Margreitter