Multiscale Clustering of Geometrical Network
correlation calculation
PFN calculation
Parallelized PFN computation
Toy example data
MEGENA clustering + MHA
Draw sunburst plot showing MEGENA module hierarchy.
calculate module degree statistics based on random triangulation model...
summarize hub information.
Scale-thresholding of multiscale modules.
co-expression network analysis
MEGENA module summary
conversion of module list object to a data.frame table format
output gene signatures into .gmt file format
Boyer-Myvold Planarity test of a network
Module plotting function.
Plot module hierarchy
subnetwork plotting functionality.
.gmt file reader function
Co-Expression Network Analysis by adopting network embedding technique. Song W.-M., Zhang B. (2015) Multiscale Embedded Gene Co-expression Network Analysis. PLoS Comput Biol 11(11): e1004574. <doi: 10.1371/journal.pcbi.1004574>.