Analysis of Antimicrobial Minimum Inhibitory Concentration Data
Convert MIC or Disk Diffusion to SIR, vectorised over antimicrobials
Calculate MIC bias
Clean up raw MIC for use as a feature
Compare and validate MIC values
Compare SIR results and generate categorical agreement
Droplevels for MIC validation object
Essential agreement for MIC validation
Fill MIC dilution levels
Force MIC-like into MIC-compatible format
Get MIC meta-data from feature database
Censor MIC values
R breakpoint for MIC
Generate dilution series
S breakpoint for MIC
Uncensor MICs
MIC: Analysis of Antimicrobial Minimum Inhibitory Concentration Data
Plot MIC validation results
Print MIC validation summary
Print MIC validation object
Check that MIC is within QC range
Check that QC measurement is at the required target
Standardise MIC to control strain
Subset MIC validation object
Summary of MIC validation results
Table
Analyse, plot, and tabulate antimicrobial minimum inhibitory concentration (MIC) data. Validate the results of an MIC experiment by comparing observed MIC values to a gold standard assay, in line with standards from the International Organization for Standardization (2021) <https://www.iso.org/standard/79377.html>.