Topological Data Analysis: Mapper Algorithm
Cut the hierarchical clustering tree to define clusters
Cover points based on intervals and overlap
Conditional Probability Embedding for Mapper Nodes
Find the optimal number of clusters for k-means
Fuzzy Mapper Algorithm (Fixed Adjacency Calculation)
GridSearch searched over a list of interval width and overlap, useful ...
Mapper Algorithm
Visualizes the correlation between two Mapper colorings.
Create Mapper Edges
Plot Mapper Result
Create Mapper Vertices
Perform clustering within a level set
GridSearch searched over a list of interval width and overlap, useful ...
Construct adjacency matrix of the simplicial complex
Convert level set multi-index (lsmi) to flat index (lsfi)
Convert level set flat index (lsfi) to multi-index (lsmi)
The Mapper algorithm from Topological Data Analysis, the steps are as follows 1. Define a filter (lens) function on the data. 2. Perform clustering within each level set. 3. Generate a complex from the clustering results.