calibration_surro function

calibration_surro

helper function that calculates the Platt Calibrations for all the surrogates

calibration_surro(
  bin_phenotypes,
  surrogates,
  bin_names,
  bin_pheno_available,
  pl = FALSE,
  nbins = 10
)

Arguments

• bin_phenotypes: data.frame with binary phenotypes resulting form binarize_all_pheno
• surrogates: data.frame with surrogates resulting from calculate_surrogate_scores
• bin_names: string with the names of the binarize clinical variables
• bin_pheno_available: string with the names of the binarize clinical variables available in the dataset
• pl: TRUE/FALSE. If TRUE creates the calibration plots
• nbins: number of bins for the plots

Returns

list with the calibrated surrogates

See Also

plattCalibration