plot_corply function

plot_corply

Function creating plottig the correlation between 2 datasets, dat1 x dat2 on basis of (partial) correlations

plot_corply(
  res,
  main = NULL,
  zlim = NULL,
  reorder.x = FALSE,
  reorder.y = reorder.x,
  resort_on_p = FALSE,
  abs = FALSE,
  cor.abs = FALSE,
  reorder_dend = FALSE
)

Arguments

• res: associations obtained with cor.assoc
• main: title of the plot
• zlim: max association to plot
• reorder.x: logical indicating if the function should reorder the x axis based on clustering
• reorder.y: logical indicating if the function should reorder the y axis based on clustering
• resort_on_p: logical indicating if the function should reorder x and y axis based on the pvalues of the associations
• abs: logical indicating if the function should reorder based the absolute values
• cor.abs: logical indicating if the function should reorder the plot base on the absolute values
• reorder_dend: Tlogical indicating if the function should reorder the plot based on dendrogram

Returns

heatmap with the results of cor.assoc

Examples

library(stats)

#load the dataset
m <- as.matrix(synthetic_metabolic_dataset)

#Compute the pearson correlation of all the variables in the data.frame metabolic_measures
cors<-cor_assoc(m, m, MiMIR::metabolites_subsets$MET63,MiMIR::metabolites_subsets$MET63)
#Plot the correlations
plot_corply(cors, main="Correlations metabolites")

See Also

cor_assoc