MoBPS1.6.64 package

Add a genotyping array

Add a trait as a linear combination of other traits

Add something to the diagonal

Add a relationship matrix for founder individuals

Moore-Penrose-Transfomration

Analyze genomic values

Analyze allele frequency of a single marker

Decoding of bitwise-storing in R

Bitwise-storing in R

Breeding function

Internal function to simulate one meiosis

Development of genetic/breeding value using a boxplot

Development of genetic/breeding value

BV standardization

Calculate breeding values

Relatedness check between two individuals

Clean-up recombination points

Origins-coding(R)

Combine traits

Compute costs of a breeding program by cohorts

Compute costs of a breeding program

Compute genotype/haplotype

Compute genotype/haplotype in gene editing application

Generation of the starting population

Create a phenotypic transformation

Generation of genomic traits

Origins-Decoding(R)

Remove miraculix-coding for genotypes

Derive loop elements

Add a genotyping array

Detection of parental/child nodes

Internal gene editing function

Estimation of marker effects

Estimate effective population size

Martini-Test function

Position detection (chromosome)

Position detection (SNPs)

Founder simulation

Function to generate a new individual

Admixture Plot

Derive age point

Export underlying true breeding values

Export estimated breeding values

Derive class

Export Cohort-names

Derive creating type

Derive time of culling

gen/database/cohorts conversion

Derive death point

Dendrogram Heatmap

Dendrogram

Dendrogram

Calculate Nei distance between two or more population

Compute marker frequency in QTL-markers

Estimate effective population size

Derive genotypes of selected individuals

Derive genotyping status

Derive which markers are genotyped of selected individuals

Derive haplotypes of selected individuals

Derive ID on an individual

Export location of individuals from the population list

Extract bv/pheno/geno of selected individuals

Map generation

Export underlying number of observations per phenotype

Principle components analysis

Derive pedigree

Derive pedigree including grandparents

Derive pedigree parents and grandparents

Generate plink-file (pedmap)

Export underlying number of used offspring for offspring phenotypes

Export underlying offspring phenotypes

Export underlying phenotypes

Phylogenetic Tree

QTL effect extraction

QTL extraction

QTL effect variance extraction

Derive genetic origins

Export underlying reliabilities

Export derived breeding values based on the selection index

Export underlying last used selection index

Derive time point

Generate vcf-file

Function to exclude individuals from a database

Manually enter estimated breeding values

Simulation of a breeding program based on a JSON-file from MoBPSweb

Devolopment of genetic/breeding value

Approximate empirical kinship

Empirical kinship

Derive expected kinship

Generate LD plot

Miesenberger Index

Add miraculix-coding for genotypes

Mutation intro

Set new base generation

Optimal genetic contribution

Simulation of a given pedigree

Internal function to perform imputing/phasing

Plot Population

Export estimated breeding values

Set defaults

Apply sort and unique

Single Step GBLUP

Summary Population

Generation of a sublist