Nested Association Mapping
Fixation Index
Bayesian Mixed Model
Genomic mixed model
Empirical Bayes Genome Wide Association Mapping
Internal functions
Manhattan plot for Association Studies
Nested Association Mapping
Restricted Maximum Likelihood
SNP heritability
SNP Quality Control
Genome-wide prediction
Designed for association studies in nested association mapping (NAM) panels, experimental and random panels. The method is described by Xavier et al. (2015) <doi:10.1093/bioinformatics/btv448>. It includes tools for genome-wide associations of multiple populations, marker quality control, population genetics analysis, genome-wide prediction, solving mixed models and finding variance components through likelihood and Bayesian methods.