OmopSketch1.0.1 package

Characterise Tables of an OMOP Common Data Model Instance

clinicalTables

Tables in the cdm_reference that contain clinical information

consistent-doc

Helper for consistent documentation

databaseCharacteristics

Summarise Database Characteristics for OMOP CDM

dateRange-startDate

Helper for consistent documentation of dateRange.

mockOmopSketch

Creates a mock database to test OmopSketch package

OmopSketch-package

OmopSketch: Characterise Tables of an OMOP Common Data Model Instance

plot-doc

Helper for consistent documentation for plots.

plotConceptSetCounts

Plot the concept counts of a summariseConceptSetCounts output

plotInObservation

Create a ggplot2 plot from the output of summariseInObservation()

plotObservationPeriod

Create a plot from the output of summariseObservationPeriod()

plotPerson

Visualise the output of summarisePerson()

plotRecordCount

Create a ggplot of the records' count trend

plotTrend

Create a ggplot2 plot from the output of summariseTrend()

reexports

Objects exported from other packages

shinyCharacteristics

Generate an interactive Shiny application that visualises the results ...

style-table

Helper for consistent documentation of table arguments.

summariseClinicalRecords

Summarise an omop table from a cdm object

summariseConceptCounts

Summarise concept counts in patient-level data

summariseConceptIdCounts

Summarise concept use in patient-level data

summariseConceptSetCounts

Summarise concept counts in patient-level data

summariseInObservation

Summarise the number of people in observation during a specific interv...

summariseMissingData

Summarise missing data in omop tables

summariseObservationPeriod

Summarise the observation period table getting some overall statistics...

summariseOmopSnapshot

Summarise a cdm_reference object creating a snapshot with the metadata...

summarisePerson

Summarise person table

summariseRecordCount

Summarise record counts of an omop_table using a specific time interva...

summariseTrend

Summarise temporal trends in OMOP tables

tableClinicalRecords

Create a visual table from a summariseClinicalRecord() output

tableConceptIdCounts

Create a visual table from a summariseConceptIdCounts() result

tableInObservation

Create a visual table from a summariseInObservation() result

tableMissingData

Create a visual table from a summariseMissingData() result

tableObservationPeriod

Create a visual table from a summariseObservationPeriod() result

tableOmopSnapshot

Create a visual table from a summarise_omop_snapshot result

tablePerson

Visualise the results of summarisePerson() into a table

tableRecordCount

Create a visual table from a summariseRecordCount() result

tableTopConceptCounts

Create a visual table of the most common concepts from `summariseConce...

tableTrend

Create a visual table from a summariseTrend() result

Summarises key information in data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model. Assess suitability to perform specific epidemiological studies and explore the different domains to obtain feasibility counts and trends.

  • Maintainer: Cecilia Campanile
  • License: Apache License (>= 2)
  • Last published: 2026-02-06