Open Tree of Life Chronograms
Check input for other functions
Gets classification paths for a vector of taxa
Clean up some issues with Open Tree of Life chronograms For now it 1) ...
Identify, extract and clean taxonomic children names from a `taxonomy_...
Use this instead of rotl::tol_subtree() when taxa are not in synthes...
Get the Open Tree of Life Taxonomic identifiers (OTT ids) and name of ...
Get the Open Tree of Life Taxonomic identifier (OTT id) and name of al...
Eliminates unmatched (NAs) and invalid taxa from a `rotl::tnrs_match_n...
Date with Paleobiology Database and paleotree.
Get the lineage of a set of taxa. .get_ott_lineage uses `rotl::taxon...
Get OTT ids from a character vector containing species names and OTT i...
Get the ages for a taxon from PBDB
Get all chronograms from Open Tree of Life database
Extract valid children from given taxonomic name(s) or Open Tree of Li...
Check if a tree is a valid chronogram.
Checks if phy is a phylo object and/or a chronogram.
Find all authors and where they have deposited their trees
Create a cache from Open Tree of Life
Associate Open Tree of Life authors with studies
Create an overlap table
Associate TreeBase authors with studies
Create a cache from TreeBase
Add Open Tree of Life Taxonomy to tree nodes.
Check if a tree has branch lengths
Convert spaces to underscores in trees.
Convert underscores to spaces in trees.
Get an mrcaott tag from an OpenTree induced synthetic tree and get its...
Summarize taxon age from PBDB to just a single min and max age
Taxon name resolution service (tnrs) applied to a vector of names by b...
Gets a taxonomic tree from a vector of taxa
Update all data files as data objects for the package
Create an updated OpenTree chronograms database object
Chronogram database constructed from Open Tree of Life's phylogenetic store.