Load and Process Passive Acoustic Data
AcousticEvent Class
AcousticStudy Class
Add Annotation Data to an AcousticStudy Object
Add Binaries to a PAMpalSettings Object
Add a Calibration File to a PAMpalSettings Object
Add a Database to a PAMpalSettings Object
Add FPOD Detector to an AcousticStudy
Add a Function to a PAMpalSettings Object
Add GPS Locations to an AcousticStudy
Add Hydrophone Depth Data to an AcousticStudy
Add Measures
addNote
Add Recordings to an AcousticStudy Object
Add Settingss to a PAMpalSettings Object
Add Wave Height Data to an AcousticStudy
Combine AcousticStudy Objects
Calculate Average Spectra of Clicks
Calculate Depth from Echoes
Calculate Inter-Click Interval
Run Custom Calculations on Pamguard Module Data
Check an AcousticStudy Object for Issues
Export Data for a BANTER Model
Filter an AcousticStudy or AcousticEvent Object
Filter Candidate Echo Depths
Get Raw Binary Data for Detections
Get Wav Clips of Data
Extract and Combine Detector Data
Get Warning Messages
Check if an Object is an AcousticEvent
Check if an Object is an AcousticStudy
Check if an Object is a PAMpalSettings
Load Pamguard XML Settings
Mark Detections as Annotated
Match Environmental Data to an AcousticStudy Object
Match time-based data to PAMpal objects
AcousticEvent and AcousticStudy accessors
PAMpalSettings Class
Constructor for PAMpalSettings Object
Explore Data in an Interactive Shiny Plot
Plot Spectrogram or Cepstrogram
Plot Graphical Representations of Waveforms
Load and Process Detections from Pamguard
Remove Binaries from a PAMpalSettings Object
Remove a Calibration Function from a PAMpalSettings Object
Remove a Database from a PAMpalSettings Object
Remove a Function from a PAMpalSettings Object
removeNote
Remove Settings from a PAMpalSettings Object
Calculate a Set of Measurements for Whistles
Run Echo Depth Review App
Run ICI Review App
Subsample Detectors in AcousticStudy
Set the Species Classification of Events
Calculate a Set of Measurements from a Cepstrum Contour
Calculate a Set of Measurements for Clicks
Summarise Dive Depth
Update Location of Files in an AcousticStudy
Update PAMpal S4 Object
Create Wav Clips of Data
Write Wigner Transform Data of Click Detections to Disk
Tools for loading and processing passive acoustic data. Read in data that has been processed in 'Pamguard' (<https://www.pamguard.org/>), apply a suite processing functions, and export data for reports or external modeling tools. Parameter calculations implement methods by Oswald et al (2007) <doi:10.1121/1.2743157>, Griffiths et al (2020) <doi:10.1121/10.0001229> and Baumann-Pickering et al (2010) <doi:10.1121/1.3479549>.