PEIMAN21.0.1 package

Post-Translational Modification Enrichment, Integration, and Matching Analysis

getTaxonomyName

Return the exact taxonomy name for list of protein

PEIMAN2-package

PEIMAN2: Post-Translational Modification Enrichment, Integration, and ...

plotEnrichment

Plot and match singular enrichment results

plotPSEA

Plot the results of protein set enrichment analysis (PSEA)

plotRunningScore

Plot running score plot for the results of psea

psea2mass

Translate PSEA results for Mass Spectrometry searching tools

runEnrichment

Run singular enrichment analysis (SEA) for a given list of protein

runPSEA

Run Protein Set Enrichment Analysis (PSEA)

sea2mass

Translate SEA results for Mass Spectrometry searching tools

Download source packageRead PDF manual

Functions and mined database from 'UniProt' focusing on post-translational modifications to do single enrichment analysis (SEA) and protein set enrichment analysis (PSEA). Payman Nickchi, Uladzislau Vadadokhau, Mehdi Mirzaie, Marc Baumann, Amir Ata Saei, Mohieddin Jafari (2025) <doi:10.1002/pmic.202400238>.

  • Maintainer: Payman Nickchi
  • License: GPL (>= 3)
  • Last published: 2025-05-31