PERMANOVA0.2.0 package

Multivariate Analysis of Variance Based on Distances and Permutations

AddClusterToBiplot

Add Clusters to a Biplot Object

BinaryVectorCheck

Checks if a vector is binary

BiplotVar

Draws a variable on a biplot

BootDisMANOVA

Multivariate Analysis of Variance based on Distances and Bootstrap

BootDistCanonicalAnalysis

Canonical Analysis based on Distances

Circle2

Draws a circle.

ConcEllipse

Non-parametric concentration ellipses

ConstructContrasts

Construction of contrasts for several factors

Cumsum

Cumulative sums

DistBinary

Distances for binary data

DistContinuous

Distances among individuals with continuous data

Dlines

Connects two sets of points by lines

FactorToBinary

Converts a Factor into its indicator matrix

GetScalesBiplot

Calculates the scales for the variables on a linear biplot

Ginv

G inverse

inbox

Checks if a point is inside a box

IniTransform

Initial transformation of a data matrix

MANOVA.Estimation

Estimation of the MANOVA parameters.

MANOVA

Multivariate Analysis of Variance (MANOVA)

mgc

Mixture Gaussian Clustering

Ones

Matrix of ones

PERMANOVA.Estimation

Estimation of the PERMANOVA parameters

PERMANOVA

PERMANOVA: MANOVA based on distances

PerMANOVA.Simple

PERMANOVA from a matrix of distancies

plot.BootCanonAnalysis

Plots the principal coordinates of the group centers and the bootstrap...

plot.ellipse

Plot a concentration ellipse

plot.MANOVA.Biplot

Plots the results of a MANOVA Biplot

plot.MANOVA

Plots the results of a MANOVA Biplot

plot.PERMANOVA

Plots the results of the PERMANOVA function

PlotClustersBiplot

Plot clusters on a biplot.

PostHocComp

Post Hoc pairwise comparisons

ProcrustesSimple

Simple Procrustes Analysis

summary.BootDisMANOVA

Summarizes the results of a Bootstrap Manova based on distances

TextSmart

Labels of a Scatter

Zeros

Matrix of zeros

Calculates multivariate analysis of variance based on permutations and some associated pictorial representations. The pictorial representation is based on the principal coordinates of the group means. There are some original results that will be published soon.

  • Maintainer: Laura Vicente-Gonzalez
  • License: GPL (>= 2)
  • Last published: 2021-09-06