PERSUADE0.1.2 package

Parametric Survival Model Selection for Decision-Analytic Models

f_cum_hazard

Calculate Cumulative Hazard Estimates

f_generate_report

Generate PDF Report for a PERSUADE Analysis

f_get_excel_template

Copy Excel Template for Model Parameters

f_hazard

Calculate Smoothed Hazard Estimates

f_PERSUADE

Main PERSUADE Function

f_plot_cure_surv_extrap

Plot Extrapolated Cure Survival Models per Group

f_plot_cure_surv_model

Cure Survival Model Overlay

f_plot_diag_cure_surv_model

Diagnostic Plot for Cure Survival Models

f_plot_diag_param_surv_model

Diagnostic Plot for Parametric Survival Models

f_plot_diag_spline_surv_model

Diagnostic Plot for Spline Survival Models

f_plot_hazard_cure_extrap

Plot Extrapolated Hazard Functions (Cure Models)

f_plot_hazard_parametric_extrap

Plot Extrapolated Hazard Functions (Parametric Models)

f_plot_hazard_spline_extrap

Plot Extrapolated Hazard Functions (Spline Models)

f_plot_hazard_with_models

Hazard Plot with Model Overlays

f_plot_km_survival_base

Plot Kaplan-Meier Survival Curves (Base R)

f_plot_km_survival

Plot Kaplan-Meier Survival Curves (ggsurvplot)

f_plot_log_cumhaz

Log-Log Survival Diagnostic Plot

f_plot_param_surv_extrap

Plot Extrapolated Parametric Survival Models per Group

f_plot_param_surv_model

Parametric Survival Model Overlay

f_plot_schoenfeld_residuals

Schoenfeld Residuals Plot

f_plot_smoothed_hazard

Smoothed Hazard Function Plot

f_plot_spline_surv_extrap

Plot Extrapolated Spline Survival Models per Group

f_plot_spline_surv_model

Spline Survival Model Overlay

f_plot_tp_cure_surv_extrap

Plot Extrapolated Annual Transition Probabilities (Cure Models)

f_plot_tp_cure_surv_model

Plot Annual Transition Probabilities for Cure Survival Models

f_plot_tp_param_surv_extrap

Plot Extrapolated Annual Transition Probabilities (Parametric Models)

f_plot_tp_param_surv_model

Plot Annual Transition Probabilities for Parametric Survival Models

f_plot_tp_spline_surv_extrap

Plot Extrapolated Annual Transition Probabilities (Spline Models)

f_plot_tp_spline_surv_model

Plot Annual Transition Probabilities for Spline Survival Models

f_summary

Compute Summary Statistics for Numeric Variables

f_surv_model_excel

Prepare Excel-Ready Survival Model Output

f_surv_model_pred_gr

Group Predictions by Survival Model

f_surv_model_pred_tp_gr

Compute Transition Probabilities for Survival Model Predictions

f_surv_model_pred

Predict from Survival Models

f_surv_model

Fit Parametric Survival Models

f_tp

Calculate Transition Probabilities

plot.PERSUADE

Plot Method for PERSUADE Objects

print.PERSUADE

Print Method for PERSUADE Objects

summary.PERSUADE

Summary Method for PERSUADE Objects

Provides a standardized framework to support the selection and evaluation of parametric survival models for time-to-event data. Includes tools for visualizing survival data, checking proportional hazards assumptions (Grambsch and Therneau, 1994, <doi:10.1093/biomet/81.3.515>), comparing parametric (Ishak and colleagues, 2013, <doi:10.1007/s40273-013-0064-3>), spline (Royston and Parmar, 2002, <doi:10.1002/sim.1203>) and cure models, examining hazard functions, and evaluating model extrapolation. Methods are consistent with recommendations in the NICE Decision Support Unit Technical Support Documents (14 and 21 <https://sheffield.ac.uk/nice-dsu/tsds/survival-analysis>). Results are structured to facilitate integration into decision-analytic models, and reports can be generated with 'rmarkdown'. The package builds on existing tools including 'flexsurv' (Jackson, 2016, <doi:10.18637/jss.v070.i08>)) and 'flexsurvcure' for estimating cure models.

  • Maintainer: Bram Ramaekers
  • License: GPL (>= 3)
  • Last published: 2025-10-09