plot-methods function

Plot frequency distribution

This is an extension of plot to visualize frequency distribution from PROsetta_data object. methods

## S4 method for signature 'PROsetta_data,ANY'
plot(
  x,
  y,
  scale_id = "combined",
  filename = NULL,
  title = NULL,
  xlim = NULL,
  color = "blue",
  nbar = 20,
  rug = FALSE,
  filetype = "pdf",
  savefile = FALSE,
  bg = "white",
  width = 6,
  height = 6,
  pointsize = 12
)

Arguments

• x: a PROsetta_data object.
• y: unused argument, exists for compatibility with plot in the base R package.
• scale_id: scale ID to plot. combined represents the combined scale. (default = combined)
• filename: the filename to write if savefile argument is TRUE.
• title: the title of the figure.
• xlim: the range of scores to plot.
• color: the color to fill the histogram. (default = blue)
• nbar: the number of histogram bars. (default = 20)
• rug: if TRUE, display the actual distribution of scores below each bar. (default = FALSE)
• filetype: the type of file to write if savefile argument is TRUE. Accepts pdf, jpeg, png, and tiff. (default = pdf)
• savefile: if TRUE, save the figure as a file. (default = FALSE)
• bg: the background color to use when saving the figure as a file. (default = white)
• width: the width of the plot. (default = 6)
• height: the height of the plot. (default = 6)
• pointsize: the point size to use when saving the figure as a file. (default = 12)

Examples

plot(data_asq)
plot(data_asq, scale_id = 1)
plot(data_asq, scale_id = 2)