PatientProfiles1.2.2 package

Identify Characteristics of Patients in the OMOP Common Data Model

addAge

Compute the age of the individuals at a certain date

addAgeQuery

Query to add the age of the individuals at a certain date

addCategories

Categorize a numeric variable

addCdmName

Add cdm name

addCohortIntersectCount

It creates columns to indicate number of occurrences of intersection w...

addCohortIntersectDate

Date of cohorts that are present in a certain window

addCohortIntersectDays

It creates columns to indicate the number of days between the current ...

addCohortIntersectFlag

It creates columns to indicate the presence of cohorts

addCohortName

Add cohort name for each cohort_definition_id

addConceptIntersectCount

It creates column to indicate the count overlap information between a ...

addConceptIntersectDate

It creates column to indicate the date overlap information between a t...

addConceptIntersectDays

It creates column to indicate the days of difference from an index dat...

addConceptIntersectFlag

It creates column to indicate the flag overlap information between a t...

addDateOfBirth

Add a column with the individual birth date

addDateOfBirthQuery

Query to add a column with the individual birth date

addDeathDate

Add date of death for individuals. Only death within the same observat...

addDeathDays

Add days to death for individuals. Only death within the same observat...

addDeathFlag

Add flag for death for individuals. Only death within the same observa...

addDemographics

Compute demographic characteristics at a certain date

addDemographicsQuery

Query to add demographic characteristics at a certain date

addFutureObservation

Compute the number of days till the end of the observation period at a...

addFutureObservationQuery

Query to add the number of days till the end of the observation period...

addInObservation

Indicate if a certain record is within the observation period

addInObservationQuery

Query to add a new column to indicate if a certain record is within th...

addObservationPeriodId

Add the ordinal number of the observation period associated that a giv...

addObservationPeriodIdQuery

Add the ordinal number of the observation period associated that a giv...

addPriorObservation

Compute the number of days of prior observation in the current observa...

addPriorObservationQuery

Query to add the number of days of prior observation in the current ob...

addSex

Compute the sex of the individuals

addSexQuery

Query to add the sex of the individuals

addTableIntersectCount

Compute number of intersect with an omop table.

addTableIntersectDate

Compute date of intersect with an omop table.

addTableIntersectDays

Compute time to intersect with an omop table.

addTableIntersectField

Intersecting the cohort with columns of an OMOP table of user's choice...

addTableIntersectFlag

Compute a flag intersect with an omop table.

availableEstimates

Show the available estimates that can be used for the different variab...

endDateColumn

Get the name of the end date column for a certain table in the cdm

mockDisconnect

Function to disconnect from the mock

mockPatientProfiles

It creates a mock database for testing PatientProfiles package

PatientProfiles-package

PatientProfiles: Identify Characteristics of Patients in the OMOP Comm...

reexports

Objects exported from other packages

sourceConceptIdColumn

Get the name of the source concept_id column for a certain table in th...

standardConceptIdColumn

Get the name of the standard concept_id column for a certain table in ...

startDateColumn

Get the name of the start date column for a certain table in the cdm

summariseResult

Summarise variables using a set of estimate functions. The output will...

variableTypes

Classify the variables between 5 types: "numeric", "categorical", "bin...

Identify the characteristics of patients in data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model.

  • Maintainer: Marti Catala
  • License: Apache License (>= 2)
  • Last published: 2024-11-28