Perseus R Interop
Set annotation columns
Get annotation columns
Set annotation rows
Get annotation rows
Coerces a MatrixData into an ExpressionSet
Coerces an ExpressionSet into a MatrixData
Bool parameter value
Create annotation rows
Set column description
Get column description
Set imputation of main data frame
Get imputation of main data frame
Infer Perseus type annotation row from DataFrame column classes
matrixData initializer
Int parameter value
Set main columns
Get main columns
MatrixData
Get names
matrixData constructor
MatrixDataCheck: a function to check the validity of an object as a pe...
Column names of main and annotation columns
Parse parameters
Set quality values of main data frame
Get quality values of main data frame
Read Perseus matrix files
Single choice index
Single choice value
write.perseus: function to generate a perseus-readable text document
Enables the interoperability between the Perseus platform for omics data analysis (Tyanova et al. 2016) <doi:10.1038/nmeth.3901> and R. It provides the foundation for developing and running Perseus plugins implemented in R by providing all required input and output handling, including data and parameter parsing as described in Rudolph and Cox 2018 <doi:10.1101/447268>.