PhenotypeR0.3.2 package

Assess Study Cohorts Using a Common Data Model

addCodelistAttribute

Adds the cohort_codelist attribute to a cohort

codelistDiagnostics

Run codelist-level diagnostics

cohortDiagnostics

Run cohort-level diagnostics

cohortDoc

Helper for consistent documentation of cohort.

cohortSampleDoc

Helper for consistent documentation of cohortSample.

databaseDiagnostics

Database diagnostics

directoryDoc

Helper for consistent documentation of directory.

expectationsDoc

Helper for consistent documentation of expectations.

getCohortExpectations

Get cohort expectations using an LLM

matchedDoc

Helper for consistent documentation of matched.

measurementSampleDoc

Helper for consistent documentation of measurementSample.

phenotypeDiagnostics

Phenotype a cohort

PhenotypeR-package

PhenotypeR: Assess Study Cohorts Using a Common Data Model

populationDiagnostics

Population-level diagnostics

populationSampleDoc

Helper for consistent documentation of populationSample.

reexports

Objects exported from other packages

resultDoc

Helper for consistent documentation of result.

shinyDiagnostics

Create a shiny app summarising your phenotyping results

survivalDoc

Helper for consistent documentation of survival.

tableCohortExpectations

Create a table summarising cohort expectations

Download source packageRead PDF manual

Phenotype study cohorts in data mapped to the Observational Medical Outcomes Partnership Common Data Model. Diagnostics are run at the database, code list, cohort, and population level to assess whether study cohorts are ready for research.

  • Maintainer: Edward Burn
  • License: Apache License (>= 2)
  • Last published: 2026-02-08 18:30:02 UTC

Useful links