Plasmidprofiler0.1.6 package

Identify Antimicrobial Resistance Positive Plasmids from Blast Results

Adds the AMR_gene column to report

Blast Results Parser Function

Combines SRST2 and Blast results into a single dataframe

Create Heatmap Graphical Object

Create Plotly Object

Defining Colours Based on a Column of Data

Filecacher

Main: Run everything

Minmax

Normalize

Order the Report

Create GGPLOT Heatmap

Blast file import function

SRST2 file import function

Save Files

Subsetting Results

Create Dendrogram Based on Plasmid Content

Adds the Zetner Score column to report