PopPsiSeqR1.0.2 package

Process and Visualize Evolve & Resequence Experiments

export.freqshft

Save the shifted frequencies

freqShifter

Frequency Shift Calculator

import.freqtbl

Load Merged Allele Frequency Table

import.smvshift

Load Smoothed Frequency Shift

pipe

Pipe operator

PopPsiSeqR-package

PopPsiSeqR: Process and Visualize Evolve & Resequence Experiments

subTractor

Subtractor

windowedFrequencyShift.plotter

Data displayer

Download source packageRead PDF manual

Handle data from evolve and resequence experiments. Measured allele frequencies (e.g., from variants called from high-throughput sequencing data) are compared using an update of the PsiSeq algorithm (Earley, Eric and Corbin Jones (2011) <doi:10.1534/genetics.111.129445>). Functions for saving and loading important files are also included, as well as functions for basic data visualization.

  • Maintainer: Charles Soeder
  • License: MIT + file LICENSE
  • Last published: 2026-01-12

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