A Bootstrap-Based Power Estimation Tool for Spatial Transcriptomics
Fit the power surface
Fit with XGBoost
Pipe operator
3D interactive visualization
Bootstrap resampling and power estimation for one single gene
Bootstrap resampling and power calculation for a subset of genes
Bootstrap resampling and power calculation upon ST data
Power value prediction
Prediction results from XGBoost
Visualization of the power surface
Visualization of the power estimations from XGBoost
Power estimation and sample size calculation for 10X Visium Spatial Transcriptomics data to detect differential expressed genes between two conditions based on bootstrap resampling. See Shui et al. (2025) <doi:10.1371/journal.pcbi.1013293> for method details.