Publish2025.07.24 package

Format Output of Various Routines in a Suitable Way for Reports and Publication

acut

Automatic selection and formatting of breaks in cut

ci.mean.default

Compute mean values with confidence intervals

ci.mean

Compute mean values with confidence intervals

coxphSeries

Run a series of Cox regression models

fixRegressionTable

Expand regression coefficient table

followupTable

Summary tables for a given followup time point.

formatCI

Formatting confidence intervals

glmSeries

Run a series of generalized linear regression analyses

labelUnits

labelUnits

lazyDateCoding

Efficient coding of date variables

lazyFactorCoding

Efficient coding of factor levels

org

Wrapper function for publish with output format org

parseInteractionTerms

Parse interaction terms

plot.ci

Plot confidence intervals

plot.regressionTable

Plotting regression coefficients with confidence limits

plot.subgroupAnalysis

plot.subgroupAnalysis

plotConfidence

Plot confidence intervals

print.ci

Print confidence intervals

print.regressionTable

printing regression tables

print.subgroupAnalysis

Printing univariate tables

print.table2x2

print results of 2x2 contingency table analysis

print.univariateTable

Printing univariate tables

pubformat

Format numbers for publication

Publish-package

Publish package

publish.CauseSpecificCox

Tabulizing cause-specific hazard ratio from all causes with confidence...

publish.ci

Publish tables with confidence intervals

publish.coxph

Tabulize hazard ratios with confidence intervals and p-values.

publish.glm

Tabulize regression coefficients with confidence intervals and p-value...

publish.htest

Pretty printing of test results.

publish.matrix

Publishing a matrix in raw, org, latex, or muse format

publish.MIresult

Present logistic regression and Cox regression obtained with mitools::...

publish

Publishing tables and figures

publish.riskReclassification

Publishing riskReclassification objects

publish.riskRegression

Publishing results of riskRegression

publish.Score

Publish predictive accuracy results

publish.summary.aov

Format summary table of aov results

publish.survdiff

Alternative summary of survdiff results

regressionTable

Regression table

spaghettiogram

Spaghettiogram

specialFrame

Special frame

splinePlot.lrm

Plot predictions of logistic regression

stripes

Background and grid color control.

subgroupAnalysis

Subgroup Analysis - Interactions and estimates

summary.ci

Summarize confidence intervals

summary.regressionTable

Formatting regression tables

summary.subgroupAnalysis

summary.subgroupAnalysis

summary.univariateTable

Preparing univariate tables for publication

sutable

Fast summary of a univariate table

table2x2

2x2 table calculus for teaching

Units

Add units to data set

univariateTable

Univariate table

A bunch of convenience functions that transform the results of some basic statistical analyses into table format nearly ready for publication. This includes descriptive tables, tables of logistic regression and Cox regression results as well as forest plots.

  • Maintainer: Thomas A. Gerds
  • License: GPL (>= 2)
  • Last published: 2025-07-24