QCGWAS1.0-9 package

Skewness and Kurtosis

Checking GWAS p-values

Convert imputation-status values to the QCGWAS standard

Create an allele-reference file from HapMap data

Automated filtering and reformatting of GWAS results files

Select high-quality data in GWAS datasets

Identify non-standard column names

Generates an intensity plot from x, y datasets

Easy loading of GWAS results files

Check and correct alleles in GWAS result files

GWAS effect-Size distribution plot

GWAS Precision Plot

Regional Association Plot

GWAS Skewness vs. Kurtosis Plot

Automated Quality Control of GWAS Results files

Histogram(s) of expected and observed data distribution

QQ and Manhattan plots

Quality Control of Genome Wide Association Study Results

QQ plot(s) of expected vs. reported p-values

Log entries for QC_GWAS

Convert alleles to the opposing DNA strand

Translate column names into standard names