RAC1.5.5 package

R Package for Aqua Culture

Bass_ind_dataloader

Function that loads forcings data for Seabass individual bioenergetic ...

Bass_ind_equations

Seabass bioenergetic individual model differential equations

Bass_ind_main

Seabass bioenergetic individual model

Bass_ind_post

Seabass bioenergetic individual model postprocessor

Bass_ind_pre

Seabass bioenergetic individual model preprocessor

Bass_ind_RKsolver

Solves the Seabass bioenergetic balance with a 4th order Runge Kutta m...

Bass_ind_skeleton

Creates the folders structure for Seabass individual bioenergetic mode...

Bass_pop_dataloader

Function that loads forcings data for Seabass population model and per...

Bass_pop_equations

Seabass bioenergetic population model differential equations

Bass_pop_loop

Function that runs the Monte Carlo simulation for the Seabass populati...

Bass_pop_main

Seabass bioenergetic population model

Bass_pop_post

Postprocess the Seabass population bioenergetic model results

Bass_pop_pre

Seabass bioenergetic population model preprocessor

Bass_pop_RKsolver

Solves the Seabass population bioenergetic balance with a 4th order Ru...

Bass_pop_skeleton

Creates the folders structure for Seabass population model

Bass_spatial_dataloader

Function that loads forcings data for Bass spatialized model and perfo...

Bass_spatial_loop

Bass bioenergetic spatialized model - spatialization loop

Bass_spatial_main

Bass bioenergetic spatialized model - spatialization loop

Bass_spatial_post

Postprocess the Mussel spatialized model results

Bass_spatial_pre

Bass bioenergetic spatialized model preprocessor

Bass_spatial_pre_int

Bass bioenergetic spatialized model preprocessor - used inside spatial...

Bass_spatial_RKsolver

Solves the Seabass bioenergetic balance with a 4th order Runge Kutta m...

Bass_spatial_skeleton

Creates the folders structure for Bass spatialized model

Bream_ind_dataloader

Function that loads forcings data for Seabream individual bioenergetic...

Bream_ind_equations

Seabream bioenergetic individual model differential equations

Bream_ind_main

Seabream bioenergetic individual model

Bream_ind_post

Postprocess the Seabream indivual bioenergetic model results

Bream_ind_pre

Seabream bioenergetic individual model preprocessor

Bream_ind_RKsolver

Solves the Seabream individual bioenergetic balance with a 4th order R...

Bream_ind_skeleton

Creates the folders structure for Seabream individual bioenergetic mod...

Bream_pop_dataloader

Function that loads forcings data for Seabream population model and pe...

Bream_pop_equations

Seabream bioenergetic population model differential equations

Bream_pop_loop

Function that runs the Monte Carlo simulation for the Seabream populat...

Bream_pop_main

Seabream bioenergetic population model

Bream_pop_post

Postprocess the Bream population bioenergetic model results

Bream_pop_pre

Seabream bioenergetic population model preprocessor

Bream_pop_RKsolver

Solves the Seabream population bioenergetic balance with a 4th order R...

Bream_pop_skeleton

Creates the folders structure for Seabream population model

Bream_spatial_dataloader

Function that loads forcings data for Bream spatialized model and perf...

Bream_spatial_loop

Bream bioenergetic spatialized model - spatialization loop

Bream_spatial_main

Bream bioenergetic spatialized model - spatialization loop

Bream_spatial_post

Postprocess the Bream spatialized model results

Bream_spatial_pre

Bream bioenergetic spatialized model preprocessor

Bream_spatial_pre_int

Bream bioenergetic spatialized model preprocessor - used inside spatia...

Bream_spatial_RKsolver

Solves the Seabream bioenergetic balance with a 4th order Runge Kutta ...

Bream_spatial_skeleton

Creates the folders structure for Bream spatialized model

Clam_ind_dataloader

Function that loads forcings data for Clam individual bioenergetic mod...

Clam_ind_equations

Clam bioenergetic individual model differential equations

Clam_ind_main

Clam bioenergetic individual model

Clam_ind_post

Postprocess the Clam individual bioenergetic model results

Clam_ind_pre

Clam bioenergetic individual model preprocessor

clam_ind_RKsolver

Solves the Clam individual bioenergetic balance with a 4th order Runge...

Clam_ind_skeleton

Creates the folders structure for Clam individual bioenergetic model

Clam_pop_dataloader

Function that loads forcings data for Clam population model and perfor...

Clam_pop_equations

Clam bioenergetic population model differential equations

Clam_pop_loop

Function that runs the Monte Carlo simulation for the Clam population ...

Clam_pop_main

Clam bioenergetic population model

Clam_pop_post

Postprocess the Clam population bioenergetic model results

Clam_pop_pre

Clam bioenergetic population model preprocessor

Clam_pop_RKsolver

Solves the Clam bioenergetic balance for population with a 4th order R...

Clam_pop_skeleton

Creates the folders structure for Clam population model

ClamF_ind_dataloader

Function that loads forcings data for Clam individual bioenergetic mod...

ClamF_ind_equations

Clam bioenergetic individual model differential equations (alternative...

ClamF_ind_main

Clam bioenergetic individual model (alternative version)

ClamF_ind_post

Postprocess the Clam indivual bioenergetic model (alternative version)...

ClamF_ind_pre

Clam bioenergetic individual model preprocessor (alternativer version)

ClamF_ind_RKsolver

Solves the Clam bioenergetic balance (alternative version) with a 4th ...

ClamF_ind_skeleton

Creates the folders structure for Clam individual bioenergetic model (...

ClamF_pop_dataloader

Function that loads forcings data for Clam population model (alternati...

ClamF_pop_equations

Clam bioenergetic population model differential equations (alternative...

ClamF_pop_loop

Function that runs the Monte Carlo simulation for the Clam population ...

ClamF_pop_main

Clam bioenergetic population model (alternative version)

ClamF_pop_post

Postprocess the Clam population bioenergetic model results (alternativ...

ClamF_pop_pre

Clam bioenergetic population model (alternative version) preprocessor

ClamF_pop_RKsolver

Solves the Clam bioenergetic balance (alternative version) with a 4th ...

ClamF_pop_skeleton

Creates the folders structure for Clam population model (alternative v...

Mussel_ind_dataloader

Function that loads forcings data for Mussel individual bioenergetic m...

Mussel_ind_equations

Mussel bioenergetic individual model differential equations

Mussel_ind_main

Mussel bioenergetic individual model

Mussel_ind_post

Postprocess the Mussel indivual bioenergetic model results

Mussel_ind_pre

Mussel bioenergetic individual model preprocessor

Mussel_ind_RKsolver

Solves the Mussel individual bioenergetic balance with a 4th order Run...

Mussel_ind_skeleton

Creates the folders structure for Mussel individual bioenergetic model

Mussel_pop_dataloader

Function that loads forcings data for Mussel population model and perf...

Mussel_pop_equations

Mussel bioenergetic population model differential equations

Mussel_pop_loop

Function that runs the Monte Carlo simulation for the Mussel populatio...

Mussel_pop_main

Mussel bioenergetic population model

Mussel_pop_post

Postprocess the Mussel population bioenergetic model results

Mussel_pop_pre

Mussel bioenergetic population model preprocessor

Mussel_pop_RKsolver

Solves the Mussel population bioenergetic balance with a 4th order Run...

Mussel_pop_skeleton

Creates the folders structure for Mussel population model

Mussel_spatial_dataloader

Function that loads forcings data for Mussel spatialized model and per...

Mussel_spatial_loop

Mussel bioenergetic spatialized model - spatialization loop

Mussel_spatial_main

Mussel bioenergetic spatialized model - spatialization loop

Mussel_spatial_post

Postprocess the Mussel spatialized model results

Mussel_spatial_pre

Mussel bioenergetic spatialized model preprocessor

Mussel_spatial_pre_int

Mussel bioenergetic spatialized model preprocessor - used inside spati...

Mussel_spatial_RKsolver

Solves the Mussel individual bioenergetic balance with a 4th order Run...

Mussel_spatial_skeleton

Creates the folders structure for Mussel spatialized model

Pop_fun

Function that solves the population dynamics equations including disco...

Solves the individual bioenergetic balance for different aquaculture sea fish (Sea Bream and Sea Bass; Brigolin et al., 2014 <doi:10.3354/aei00093>) and shellfish (Mussel and Clam; Brigolin et al., 2009 <doi:10.1016/j.ecss.2009.01.029>; Solidoro et al., 2000 <doi:10.3354/meps199137>). Allows for spatialized model runs and population simulations.

  • Maintainer: Baldan D.
  • License: MIT + file LICENSE
  • Last published: 2023-05-02