Mass Spectrometry Metabolomics Feature Clustering and Interpretation
adap.to.rc
add_params
evaluate ramSearch, MSFinder mssearch, MSFinder Structure, MSFinder Fo...
annotation.summary()
assign.z
evaluate ramSearch, MSFinder mssearch, MSFinder Structure, MSFinder Fo...
check_arguments_filter.blanks
check_arguments_filter.cv
check_arguments_replace.na
checks
cmpd.summary
compute_do.sets
compute_SpecAbundAve
compute_wt_mean
create_ramclustObj
define_samples
defineExperiment
do.findmain
export MSFinder formula prediction results in tabular format.
exportDataset
filter_blanks
filter_good_features
filter_signal
find_good_features
findfeature
findmass
foodb2msfinder
get.taxon.cids
get_ExpDes
get_instrument_platform
getData
getSmilesInchi
import.adap.kdb
import.msfinder.formulas
import.MSFinder.mssearch
write.methods
import.sirius
impRamSearch
manual.annotation.template
mean_signal_intensities
mergeRCobjects
normalized_data_batch_qc
normalized_data_tic
order_datasets
ramclustR
rc.calibrate.ri
rc.cmpd.filter.blanks
rc.cmpd.filter.cv
getClassyFire
rc.cmpd.get.pubchem
getSmilesInchi
rc.cmpd.replace.na
rc.expand.sample.names
rc.export.msp.rc
rc.feature.filter.blanks
rc.feature.filter.cv
rc.feature.normalize.batch.qc
rc.feature.normalize.qc
rc.feature.normalize.quantile
rc.feature.normalize.tic
rc.feature.replace.na
rc.get.csv.data
rc.get.df.data
rc.get.xcms.data
rc.qc
rc.ramclustr
rc.remove.qc
rc.restore.qc.samples
RCQC
remove_blanks
replace_na
write.methods
write.msp
write_csv
A feature clustering algorithm for non-targeted mass spectrometric metabolomics data. This method is compatible with gas and liquid chromatography coupled mass spectrometry, including indiscriminant tandem mass spectrometry data <DOI: 10.1021/ac501530d>.