RBesT1.7-3 package

R Bayesian Evidence Synthesis Tools

automixfit

Automatic Fitting of Mixtures of Conjugate Distributions to a Sample

BinaryExactCI

Exact Confidence interval for Binary Proportion

chains2sample

Scrambles the order of a mcmc array object for usage as a mcmc sample....

colVars

Fast column-wise calculation of unbiased variances

Curry

Functional programming utilities

dBetaBinomial

Beta-Binomial Probabilities

decision1S

Decision Function for 1 Sample Designs

decision1S_boundary

Decision Boundary for 1 Sample Designs

decision2S

Decision Function for 2 Sample Designs

decision2S_boundary

Decision Boundary for 2 Sample Designs

dlink-set

Transform Densities with a link function

ess

Effective Sample Size for a Conjugate Prior

fill

Fill numeric objects

forest_plot

Forest Plot

gMAP

Meta-Analytic-Predictive Analysis for Generalized Linear Models

integrate_density_log

internal function used for integration of densities which appears to b...

knn

k nearest neighbor algorithm for multi-variate data

likelihood

Read and Set Likelihood to the Corresponding Conjugate Prior

lodds

Logit (log-odds) and inverse-logit function.

log_inv_logit

Numerically stable log of the inv_logit function

logLik.EM

Extract log likelihood from fitted EM objects

mix

Mixture Distributions

mixbeta

Beta Mixture Density

mixcombine

Combine Mixture Distributions

mixdiff

Difference of mixture distributions

mixdist3

Utility function to instantiate 2 parameter mixture densities.

mixfit

Fit of Mixture Densities to Samples

mixgamma

The Gamma Mixture Distribution

mixlink

takes x and transforms it according to the defined link function of th...

mixmvnorm

Multivariate Normal Mixture Density

mixnorm

Normal Mixture Density

mixplot

Plot mixture distributions

mixstanvar

Mixture distributions as brms priors

oc1S

Operating Characteristics for 1 Sample Design

oc2S

Operating Characteristics for 2 Sample Design

plot.EM

Diagnostic plots for EM fits

plot.gMAP

Diagnostic plots for gMAP analyses

pos1S

Probability of Success for a 1 Sample Design

pos2S

Probability of Success for 2 Sample Design

postmix

Conjugate Posterior Analysis

preddist

Predictive Distributions for Mixture Distributions

predict.gMAP

Predictions from gMAP analyses

RBesT-package

R Bayesian Evidence Synthesis Tools

robustify

Robustify Mixture Priors

SimSum

Summarize Arrays

support

Support of Distributions

uniroot_int

Find root of univariate function of integers

Tool-set to support Bayesian evidence synthesis. This includes meta-analysis, (robust) prior derivation from historical data, operating characteristics and analysis (1 and 2 sample cases). Please refer to Weber et al. (2021) <doi:10.18637/jss.v100.i19> for details on applying this package while Neuenschwander et al. (2010) <doi:10.1177/1740774509356002> and Schmidli et al. (2014) <doi:10.1111/biom.12242> explain details on the methodology.

  • Maintainer: Sebastian Weber
  • License: GPL (>= 3)
  • Last published: 2024-01-08