PhenotypicGMM-class function

Class "PhenotypicGMM"

A subclass of the PhenotypicModel class, intended to represent the Generalist Matching Mutualism model of phenotypic evolution. This is a model of phenotypic evolution with interactions between two clades, running on two trees. 1.1

class

Objects from the Class

Objects can be created by calls of the form new("PhenotypicGMM", ...).

Slots

• n1:: Object of class "numeric" ~~
• n2:: Object of class "numeric" ~~
• name:: Object of class "character" ~~
• period:: Object of class "numeric" ~~
• aAGamma:: Object of class "function" ~~
• numbersCopy:: Object of class "numeric" ~~
• numbersPaste:: Object of class "numeric" ~~
• initialCondition:: Object of class "function" ~~
• paramsNames:: Object of class "character" ~~
• constraints:: Object of class "function" ~~
• params0:: Object of class "numeric" ~~
• tipLabels:: Object of class "character" ~~
• tipLabelsSimu:: Object of class "character" ~~
• comment:: Object of class "character" ~~

Extends

Class "PhenotypicModel", directly.

Methods

• getTipDistribution: signature(object = "PhenotypicGMM"): ...

References

Manceau M., Lambert A., Morlon H. (2017) A unifying comparative phylogenetic framework including traits coevolving across interacting lineages Systematic Biology, and the associated Supplementary material.

Author(s)

Marc Manceau

Examples

showClass("PhenotypicGMM")