Testing and Plotting Procedures for Biostatistics
Comparison of 2 Pearson's linear correlation coefficients
Equality of a Pearson's linear correlation coefficient to a given valu...
Type II permutation MANOVA using distance matrices
Anova Tables for Cumulative Link (Mixed) Models
Back-transformation of EMMeans
Bootstrap
Histogram for factor levels
QQ-plot for factor levels
Shapiro-Wilk test for factor levels
QQ-plot for factor levels
Shapiro-Wilk test for factor levels
Cross validation
Significance test for CDA
Cumulative Distribution Function of a known discrete distribution
Expected counts for comparison of response probabilities to given valu...
Pearson's Chi-squared test for binary variables
Expected counts for comparison of proportions to given values
Pairwise comparisons after a chi-squared goodness-of-fit test
Pearson's Chi-squared test for comparison of response probabilities to...
Pairwise comparisons after a chi-squared test for given probabilities
Cochran's Q test
Condition number of the Hessian matrix of a multinomial log-linear mod...
Coordinates of projected points
Comparison of several Pearson's linear correlation coefficients
Significance test for the covariance between two datasets
Martingale residuals of a Cox model
Cramer's association coefficient
Cramer's association coefficient
Coefficient of variation
Dendrogram and number of groups to be chosen
Deprecated functions in RVAideMemoire package
Cross validation
Significance test based on cross-validation
Dummy responses
Empirical logistic transformation
Fisher's exact test for binary variables
Pairwise comparisons using Fisher's exact test
Fligner-Policello test
G-test for binary variables
Pairwise comparisons after a G-test
G-test
Pairwise comparisons after a G-test for given probabilities
Significance test for GPA
Individual contributions in regression
Least rectangles linear regression
Slope of a hand-defined line
Graphical adujstment of a simple binary logistic regression to data
Creating a nls model for logistic regression from fitted values of a g...
Mode
Mood's median test
Multivariate normality QQ-Plot
Shapiro-Wilk multivariate normality test
Pairwise comparisons after an exact multinomial test
Exact multinomial test
Pairwise comparisons after an exact multinomial test for given probabi...
Univariate correlation test for multiple variables
Univariate comparison of groups for multiple binary variables
Univariate comparison of groups for multiple variables
Type II permutation test for constrained multivariate analyses
Biplot of multivariate analyses
Cross model validation
Correlations of multivariate analyses
Correlation circle of multivariate analyses
Cross validation
Loadings of multivariate analyses
Loading plot of multivariate analyses
Paired plot of multivariate analyses
Plotting of multivariate analyses
Score plot of multivariate analyses
Scores of multivariate analyses
Synthesis quality of multivariate analyses
Significance test based on cross (model) validation
Trajectory plot of multivariate analyses
Odds-ratio (multinomial regression)
Re-computation of an ordination using given row weights
Estimation of overdispersion with glmer models
Rescaling of a [0,1] variable into the (0,1) interval (and vice-versa)
Pairwise comparisons for CDA
Pairwise comparisons of groups displayed on a factorial map
Pairwise comparisons for proportions using G-tests
Pairwise Mood's median tests
Pairwise permutation tests based on cross (model) validation
Pairwise permutation MANOVAs
Pairwise permutation t tests
Pairwise permutation F tests
Pairwise F tests
(Semi-)Partial correlation
Tests for (semi-)partial association/correlation between paired sample...
Permutation Analysis of Variance
Permutation Bartlett's test of homogeneity of variances
Permutation Pearson's correlation test
Permutation Student's t-test
Permutation F test to compare two variances
Simple analysis of model residuals
Survivor curve
Variable Importance in the Projection (VIP)
Predict method for cross-validated CDA submodels
Predict method for CDA
Predict method for cross-validated submodels
Pairwise comparisons after a test for given probabilities
Pairwise comparisons after a test for given proportions
Proportions and standard errors
Wald tests for comparison of proportions
QAIC(c) calculation with GLMs of the quasi- family
EMMeans for Cumulative Link (Mixed) Models
Observed rating frequencies
Confidence intervals of a simple linear regression
Testing and Plotting Procedures for Biostatistics
"Correlation" of variables to axes in MCA or mix analyses
Standard error
Sequence generation
Confidence interval of a Spearman's rank correlation coefficient
Comparison of several Spearman's rank correlation coefficients
Divide into groups respecting relative proportions
Standardization of a data frame based on another data frame
Significance tests of coefficients (multinomial regression)
Synthesis quality of multivariate analyses
User defined contrasts for EMMeans
Wald tests for comparison of proportions to theoretical values
Wald test for comparison of a proportion to a theoretical value
Non parametric pairwise comparisons for paired data
Wilcoxon sign test
Weighted arithmetic mean
Contains miscellaneous functions useful in biostatistics, mostly univariate and multivariate testing procedures with a special emphasis on permutation tests. Many functions intend to simplify user's life by shortening existing procedures or by implementing plotting functions that can be used with as many methods from different packages as possible.