RchivalTag0.2.2 package

Analyzing and Interactive Visualization of Archival Tagging Data

bin_TempTS

bin depth-temperature time series data

classify_DayTime

Classifying the time period of the day

combine_histos

combine lists of TAD/TAT frequency data

dy_DepthTS

Plot time series data via the dygraphs interactive interface

get_DayTimeLimits

Estimating the timing of sunrise, sunset, astronomical and nautical tw...

get_thermalstrat

estimate thermal stratification indices

ggboxplot_DepthTS_by_hour

Boxplot on hourly aggregated DepthTS records

ggplot_geopos

Reads and plots geolocation estimates derived from archival tagging da...

ggplotly_geopos

Converts a ggplot2 object from ggplot_geopos() to plotly

hist_tad

Time-at-Depth histogram

hist_tat

Time-at-Temperature histogram

image_TempDepthProfiles

plots interpolated daily temperature at depth profiles

interpolate_TempDepthProfiles

interpolate daily temperature at depth profiles

leaflet_geopos

reads and plots geolocation estimates derived from archival tagging da...

merge_histos

merge and/or rebin TAD/TAT-frequency data

plot_data_coverage

Abacus plot to illustrate the data coverage of different data products...

plot_DepthTempTS

plot Depth Temperature time series data

plot_TS

plot time series data

RchivalTag

RchivalTag - Analyzing and Interactive Visualization of Archival Taggi...

read_histos

reads a TAD/TAT-histogram file from archival tags

read_PDT

read PDT data from archival one or multiple tags

read_TS

reads Time Series Data from Archival Tags

resample_PDT

resample temperature at depth data from interpolated daily temperature...

resample_TS

resample time series data at a lower resolution

simulate_DepthTS

simulate depth time series data

ts2histos

convert depth and temperature time series data to discrete Time-at-Dep...

unmerge_histos

unmerge previously grouped or merged lists of TAD/TAT frequency data

update_leaflet_elementId

update elementID of the leaflet map to avoid rendering issues in RMark...

A set of functions to generate, access and analyze standard data products from archival tagging data.

  • Maintainer: Robert K. Bauer
  • License: GPL (>= 3)
  • Last published: 2025-10-01