Rdimtools1.1.3 package

Dimension Reduction and Estimation Methods

aux_gensamples

Generate model-based samples

aux_graphnbd

Construct Nearest-Neighborhood Graph

aux_kernelcov

Build a centered kernel matrix K

aux_pkgstat

Show the number of functions for Rdimtools.

aux_preprocess

Preprocessing the data

aux_shortestpath

Find shortest path using Floyd-Warshall algorithm

estimate_boxcount

Box-counting Dimension

estimate_clustering

Intrinsic Dimension Estimation via Clustering

estimate_correlation

Correlation Dimension

estimate_danco

Intrinsic Dimensionality Estimation with DANCo

estimate_gdistnn

Intrinsic Dimension Estimation based on Manifold Assumption and Graph ...

estimate_incisingball

Intrinsic Dimension Estimation with Incising Ball

estimate_made

Manifold-Adaptive Dimension Estimation

estimate_mindkl

MiNDkl

estimate_mindml

MINDml

estimate_mle1

Maximum Likelihood Esimation with Poisson Process

estimate_mle2

Maximum Likelihood Esimation with Poisson Process and Bias Correction

estimate_nearneighbor1

Intrinsic Dimension Estimation with Near-Neighbor Information

estimate_nearneighbor2

Near-Neighbor Information with Bias Correction

estimate_packing

Intrinsic Dimension Estimation using Packing Numbers

estimate_pcathr

PCA Thresholding with Accumulated Variance

estimate_twonn

Intrinsic Dimension Estimation by a Minimal Neighborhood Information

estimate_Ustat

ID Estimation with Convergence Rate of U-statistic on Manifold

feature_CSCORE

Constraint Score

feature_CSCOREG

Constraint Score using Spectral Graph

feature_DISR

Diversity-Induced Self-Representation

feature_ENET

Elastic Net Regularization

feature_FOSMOD

Forward Orthogonal Search by Maximizing the Overall Dependency

feature_FSCORE

Fisher Score

feature_LASSO

Least Absolute Shrinkage and Selection Operator

feature_LSCORE

Laplacian Score

feature_LSDF

Locality Sensitive Discriminant Feature

feature_LSLS

Locality Sensitive Laplacian Score

feature_LSPE

Locality and Similarity Preserving Embedding

feature_MCFS

Multi-Cluster Feature Selection

feature_MIFS

Mutual Information for Selecting Features

feature_NRSR

Non-convex Regularized Self-Representation

feature_PFA

Principal Feature Analysis

feature_PROCRUSTES

Feature Selection using PCA and Procrustes Analysis

feature_RSR

Regularized Self-Representation

feature_SPECS

Supervised Spectral Feature Selection

feature_SPECU

Unsupervised Spectral Feature Selection

feature_SPUFS

Structure Preserving Unsupervised Feature Selection

feature_UDFS

Unsupervised Discriminative Features Selection

feature_UGFS

Unsupervised Graph-based Feature Selection

feature_UWDFS

Uncorrelated Worst-Case Discriminative Feature Selection

feature_WDFS

Worst-Case Discriminative Feature Selection

linear_ADR

Adaptive Dimension Reduction

linear_AMMC

Adaptive Maximum Margin Criterion

linear_ANMM

Average Neighborhood Margin Maximization

linear_ASI

Adaptive Subspace Iteration

linear_BPCA

Bayesian Principal Component Analysis

linear_CCA

Canonical Correlation Analysis

linear_CNPE

Complete Neighborhood Preserving Embedding

linear_CRP

Collaborative Representation-based Projection

linear_DAGDNE

Double-Adjacency Graphs-based Discriminant Neighborhood Embedding

linear_DNE

Discriminant Neighborhood Embedding

linear_DSPP

Discriminative Sparsity Preserving Projection

linear_ELDE

Exponential Local Discriminant Embedding

linear_ELPP2

Enhanced Locality Preserving Projection (2013)

linear_ESLPP

Extended Supervised Locality Preserving Projection

linear_EXTLPP

Extended Locality Preserving Projection

linear_FA

Exploratory Factor Analysis

linear_FSSEM

Feature Subset Selection using Expectation-Maximization

linear_ICA

Independent Component Analysis

linear_ISOPROJ

Isometric Projection

linear_KMVP

Kernel-Weighted Maximum Variance Projection

linear_KUDP

Kernel-Weighted Unsupervised Discriminant Projection

linear_LDA

Linear Discriminant Analysis

linear_LDAKM

Combination of LDA and K-means

linear_LDE

Local Discriminant Embedding

linear_LDP

Locally Discriminating Projection

linear_LEA

Locally Linear Embedded Eigenspace Analysis

linear_LFDA

Local Fisher Discriminant Analysis

linear_LLP

Local Learning Projections

linear_LLTSA

Linear Local Tangent Space Alignment

linear_LMDS

Landmark Multidimensional Scaling

linear_LPCA2006

Locally Principal Component Analysis by Yang et al. (2006)

linear_LPE

Locality Pursuit Embedding

linear_LPFDA

Locality Preserving Fisher Discriminant Analysis

linear_LPMIP

Locality-Preserved Maximum Information Projection

linear_LPP

Locality Preserving Projection

linear_LQMI

Linear Quadratic Mutual Information

linear_LSDA

Locality Sensitive Discriminant Analysis

linear_LSIR

Localized Sliced Inverse Regression

linear_LSPP

Local Similarity Preserving Projection

linear_MDS

(Classical) Multidimensional Scaling

linear_MFA

Marginal Fisher Analysis

linear_MLIE

Maximal Local Interclass Embedding

linear_MMC

Maximum Margin Criterion

linear_MMP

Maximum Margin Projection

linear_MMSD

Multiple Maximum Scatter Difference

linear_MODP

Modified Orthogonal Discriminant Projection

linear_MSD

Maximum Scatter Difference

linear_MVP

Maximum Variance Projection

linear_NOLPP

Nonnegative Orthogonal Locality Preserving Projection

linear_NONPP

Nonnegative Orthogonal Neighborhood Preserving Projections

linear_NPCA

Nonnegative Principal Component Analysis

linear_NPE

Neighborhood Preserving Embedding

linear_ODP

Orthogonal Discriminant Projection

linear_OLDA

Orthogonal Linear Discriminant Analysis

linear_OLPP

Orthogonal Locality Preserving Projection

linear_ONPP

Orthogonal Neighborhood Preserving Projections

linear_OPLS

Orthogonal Partial Least Squares

linear_PCA

Principal Component Analysis

linear_PFLPP

Parameter-Free Locality Preserving Projection

linear_PLS

Partial Least Squares

linear_PPCA

Probabilistic Principal Component Analysis

linear_RLDA

Regularized Linear Discriminant Analysis

linear_RNDPROJ

Random Projection

linear_RPCAG

Robust Principal Component Analysis via Geometric Median

linear_RSIR

Regularized Sliced Inverse Regression

linear_SAMMC

Semi-Supervised Adaptive Maximum Margin Criterion

linear_SAVE

Sliced Average Variance Estimation

linear_SDA

Semi-Supervised Discriminant Analysis

linear_SDLPP

Sample-Dependent Locality Preserving Projection

linear_SIR

Sliced Inverse Regression

linear_SLPE

Supervised Locality Pursuit Embedding

linear_SLPP

Supervised Locality Preserving Projection

linear_SPC

Supervised Principal Component Analysis

linear_SPCA

Sparse Principal Component Analysis

linear_SPP

Sparsity Preserving Projection

linear_SSLDP

Semi-Supervised Locally Discriminant Projection

linear_UDP

Unsupervised Discriminant Projection

linear_ULDA

Uncorrelated Linear Discriminant Analysis

nonlinear_BMDS

Bayesian Multidimensional Scaling

nonlinear_CGE

Constrained Graph Embedding

nonlinear_CISOMAP

Conformal Isometric Feature Mapping

nonlinear_CRCA

Curvilinear Component Analysis

nonlinear_CRDA

Curvilinear Distance Analysis

nonlinear_DM

Diffusion Maps

nonlinear_DPPCA

Dual Probabilistic Principal Component Analysis

nonlinear_DVE

Distinguishing Variance Embedding

nonlinear_FastMap

FastMap

nonlinear_HYDRA

Hyperbolic Distance Recovery and Approximation

nonlinear_IDMAP

Interactive Document Map

nonlinear_ILTSA

Improved Local Tangent Space Alignment

nonlinear_ISOMAP

Isometric Feature Mapping

nonlinear_ISPE

Isometric Stochastic Proximity Embedding

nonlinear_KECA

Kernel Entropy Component Analysis

nonlinear_KLDE

Kernel Local Discriminant Embedding

nonlinear_KLFDA

Kernel Local Fisher Discriminant Analysis

nonlinear_KLSDA

Kernel Locality Sensitive Discriminant Analysis

nonlinear_KMFA

Kernel Marginal Fisher Analysis

nonlinear_KMMC

Kernel Maximum Margin Criterion

nonlinear_KPCA

Kernel Principal Component Analysis

nonlinear_KQMI

Kernel Quadratic Mutual Information

nonlinear_KSDA

Kernel Semi-Supervised Discriminant Analysis

nonlinear_LAMP

Local Affine Multidimensional Projection

nonlinear_LAPEIG

Laplacian Eigenmaps

nonlinear_LISOMAP

Landmark Isometric Feature Mapping

nonlinear_LLE

Locally Linear Embedding

nonlinear_LLLE

Local Linear Laplacian Eigenmaps

nonlinear_LTSA

Local Tangent Space Alignment

nonlinear_MMDS

Metric Multidimensional Scaling

nonlinear_MVE

Minimum Volume Embedding

nonlinear_MVU

Maximum Variance Unfolding / Semidefinite Embedding

nonlinear_NNP

Nearest Neighbor Projection

nonlinear_PHATE

Potential of Heat Diffusion for Affinity-based Transition Embedding

nonlinear_PLP

Piecewise Laplacian-based Projection (PLP)

nonlinear_REE

Robust Euclidean Embedding

nonlinear_RPCA

Robust Principal Component Analysis

nonlinear_SAMMON

Sammon Mapping

nonlinear_SNE

Stochastic Neighbor Embedding

nonlinear_SPE

Stochastic Proximity Embedding

nonlinear_SPLAPEIG

Supervised Laplacian Eigenmaps

nonlinear_SPMDS

Spectral Multidimensional Scaling

nonlinear_TSNE

t-distributed Stochastic Neighbor Embedding

oos_LINPROJ

OOS : Linear Projection

We provide linear and nonlinear dimension reduction techniques. Intrinsic dimension estimation methods for exploratory analysis are also provided. For more details on the package, see the paper by You and Shung (2022) <doi:10.1016/j.simpa.2022.100414>.

  • Maintainer: Kisung You
  • License: MIT + file LICENSE
  • Last published: 2025-09-22