Rpdb2.4.1 package

Read, Write, Visualize and Manipulate PDB Files

mirror

Reflexion of Atomic Coordinates

mirrorHelpers

Helper Functions for reflection of Atomic Coordinates

reindex

Reinitialize Object Indexing

addAxes

Add Axes or PBC Box to the rgl Scene

addLabels

Add Labels to the rgl Scene

atoms

Create atoms Object

basis

The Basis of an Object

bond-angle-dihedral

Atomic Bond Lengths, Angles and Dihedrals

cellProperties

Properties of a Unit Cell

centres.ppRoll

Centres-of-Geometry: Rolling Window

centres

Centres-of-Geometry and Centres-of-Mass

conect

Create conect Object

coords

The Atomic Coordinates of an Object

crystal

Create crystal Object

xyz2abc

From Cartesian to Fractional Coordinates and Vice Versa

distances

Inter-Atomic Distances

format.pdb.title

Format "Title" Field of PDB File

inertia

Moment of Inertia of a Molecular System

masses

Mass of Chemical Elements

merge.coords

Merging Molecular Systems

natom

Number of Atoms in an Object Containing Atomic Coordinates

pdb

Create an Object of Class pdb

proj.line3d

Projections of Objects

range.coords

Range of Atomic Coordinates

read.pdb

PDB File Reader

replicate

Replicate Atomic Coordinates

rotation

Rotation of Atomic Coordinates

rotationHelpers

Helper Functions for Rotation of Atomic Coordinates

Rpdb-package

Read, Write, Visualize and Manipulate PDB Files

split.pdb

Divide and Reassemble pdb Objects

subset.atoms

Subsetting atoms and pdb Objects

toSymbols

Atomic Symbols Converter

translation

Translation of Atomic Coordinates

translationHelpers

Helper Functions for Translation of Atomic Coordinates

unsplit

Reassemble Groups

vectorialOperations

Basic Vectorial Operations

viewAxis

Set the View of the rgl Scene

visualize

Visualize a Molecular Structure

wrap

Wrap Atomic Coordinates

write.pdb

PDB File Writer

Provides tools to read, write, visualize Protein Data Bank (PDB) files and perform some structural manipulations.

  • Maintainer: Leonard Mada
  • License: GPL (>= 3)
  • Last published: 2025-09-15