Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data
Draw time-series heatmap
Visualise SCORPIUS
Extract modules of features
Calculate the importance of a feature
Generate a synthetic dataset
Infer an initial trajectory through space
Infer linear trajectory through space
Dimensionality reduction
Objects exported from other packages
Reverse a trajectory
SCORPIUS: Trajectory inference from single-cell RNA sequencing data.
Infer a trajectory using SCORPIUS
An accurate and easy tool for performing linear trajectory inference on single cells using single-cell RNA sequencing data. In addition, 'SCORPIUS' provides functions for discovering the most important genes with respect to the reconstructed trajectory, as well as nice visualisation tools. Cannoodt et al. (2016) <doi:10.1101/079509>.
Useful links