Visualize Data for Host and Viral Population from 'SMITIDstruct' using 'HTMLwidgets'
createRainbowColors Create a list of colors for each value v
demo.SMITIDvisu.run
df2geojson
maptt
mapttProxy
mapttSelectHost
compute the minimum spanning tree
mstVariant
mstVariantProxy
Visualize Data for Host and Viral Population from SMITIDstruct using H...
Shiny bindings for visualisation widgets
Distance matrix of observed variants sequences of a host 113 at time 2...
Distance matrix of observed variants sequences of a host 113 at time 2...
List of variants ID with subvector for time and value.
Variants proportions and count for host 113 at time 2 from simulation.
Variants proportions and count for an host 113 at time 2, 3 and 4 from...
timeLine
timeLineProxy get an instance of a timeline
transmissionTree
transmissionTreeProxy
Pathogen link over the time
Data.frame of hosts events information by time. Fake data.
Host list with there status over the time.
updatemstVariant
updateTimeLine
updateTransmissionTree
Visualisation tools for 'SMITIDstruct' package. Allow to visualize host timeline, transmission tree, index diversities and variant graph using 'HTMLwidgets'. It mainly using 'D3JS' javascript framework.
Useful links