Automated Functional Annotation of Genetic Variants and Linked Proxies
Run the annotation pipeline on a list of variants from shiny app
Demo run of the annotation pipeline
List population from human database (1000 Genomes project)
data release available on this REST server.
Query GTEx portal for Variant's genomic position based on rsID Retriev...
Computes and returns LD values between the given variants.
Finds variants in high LD
Query Ensembl for variant information based on genomic position
Copy a sample configuration file
Merge multiple output files
Checks if the service is alive
Run the annotation pipeline on a list of variants
Analyze STRING DB Interactions and perform functional enrichment
To automated functional annotation of genetic variants and linked proxies. Linked SNPs in moderate to high linkage disequilibrium (e.g. r2>0.50) with the corresponding index SNPs will be selected for further analysis.