Statistical Approach via Pseudo-Value Information and Estimation
DCtaxa_tab
pseudoreg
pseudoreg.summary()
pval
pval_specific_var
qval
qval_specific_var
asso_mat
coeff
coeff_specific_var
SOHPIE_DNA
sparcc wrapper
stderrs
stderrs_specific_var
thetahats
thetatildefun
'SOHPIE' (pronounced as SOFIE) is a novel pseudo-value regression approach for differential co-abundance network analysis of microbiome data, which can include additional clinical covariate in the model. The full methodological details can be found in Ahn S and Datta S (2023) <arXiv:2303.13702v1>.