Functions for Analyzing and Plotting Estuary Monitoring Data
Annual Range Timeseries
Assign seasons to SWMP sampling data
Create background map
Create a List of Flextable Objects
Create a Flextable Object of Reserve Names
Create a Flextable Object of Seasonal Kendall Results
Convert Parameter Abbreviations
Filter Reformatted Seasonal Kendall Results
Filter Reformatted Seasonal Kendall Results
Return a vector of geographically unique NERR Stations
Identify NERRS reserve from metadata
Identify shapefile for NERRS reserve
Return NERRS reserve site code based on data in the data file
Identify NERRS sampling locations from metadata
Identify NERRS reserve stations from metadata
Historical Daily Range Timeseries
Historical Monthly/Seasonal Range Timeseries
Import local CDMO data
P-Value labels for Plotting
Load and format shapefile for reserve level map
Reserve National Map with Seasonal Kendall Results
Boxplots of raw data by user-defined season for a target year
Replace Inf/-Inf/NaN values
Local Reserve Map for Custom Stations
Local Reserve Map With Seasonal Kendall Results for Custom Stations
Local Reserve Map
Reserve National Map
Local Reserve Map With Seasonal Kendall Results
NERRS Sampling Location Data Frame
Cumulative Bar Plot
Seasonal boxplots
Seasonal Dot Plot
Set reasonable date breaks labels
Set reasonable date breaks
Select reasonable minor breaks for scale_x_datetime
Seasonal Kendall Analysis for Seasonal Data
Tidy Seasonal Kendall Results
Standard Parameter Check
Summarise Hand-off Files from Reserve Level Reports
Water Quality Threshold Plot For Parameters With Criteria
Tabulate Threshold Exceedances
Threshold Percentile Plot
Summary Plots for Threshold Identification
Generate Plot Title Based on NERR Site ID
Update reserve sampling stations
Generate y-axis Label Based on SWMP Parameter Abbreviation
Generate y-axis Label Based on SWMP Parameter Abbreviation
Tools for performing routine analysis and plotting tasks with environmental data from the System Wide Monitoring Program of the National Estuarine Research Reserve System <https://cdmo.baruch.sc.edu/>. This package builds on the functionality of the 'SWMPr' package <https://cran.r-project.org/package=SWMPr>, which is used to retrieve and organize the data. The combined set of tools address common challenges associated with continuous time series data for environmental decision making, and are intended for use in annual reporting activities. References: Beck, Marcus W. (2016) <ISSN 2073-4859><https://journal.r-project.org/archive/2016-1/beck.pdf> Rudis, Bob (2014) <https://rud.is/b/2014/11/16/moving-the-earth-well-alaska-hawaii-with-r/>. United States Environmental Protection Agency (2015) <https://cfpub.epa.gov/si/si_public_record_Report.cfm?Lab=OWOW&dirEntryId=327030>.