ClosestFeature function

Closest Feature

Find the closest feature to a given set of genomic regions

ClosestFeature(object, regions, annotation = NULL, ...)

Arguments

• object: A Seurat object
• regions: A set of genomic regions to query
• annotation: A GRanges object containing annotation information. If NULL, use the annotations stored in the object.
• ...: Additional arguments passed to StringToGRanges

Returns

Returns a dataframe with the name of each region, the closest feature in the annotation, and the distance to the feature.

Examples

ClosestFeature(
  object = atac_small,
  regions = head(granges(atac_small))
)