ConvertMotifID function

Convert between motif name and motif ID

Converts from motif name to motif ID or vice versa. To convert common names to IDs, use the name parameter. To convert IDs to common names, use the id parameter.

ConvertMotifID(object, ...)

## Default S3 method:
ConvertMotifID(object, name, id, ...)

## S3 method for class 'Motif'
ConvertMotifID(object, ...)

## S3 method for class 'ChromatinAssay'
ConvertMotifID(object, ...)

## S3 method for class 'Assay'
ConvertMotifID(object, ...)

## S3 method for class 'StdAssay'
ConvertMotifID(object, ...)

## S3 method for class 'Seurat'
ConvertMotifID(object, assay = NULL, ...)

Arguments

• object: A Seurat, ChromatinAssay, or Motif object
• ...: Arguments passed to other methods
• name: A vector of motif names
• id: A vector of motif IDs. Only one of name and id should be supplied
• assay: For Seurat object. Name of assay to use. If NULL, use the default assay

Returns

Returns a character vector with the same length and order as the input. Any names or IDs that were not found will be stored as NA.