CountsInRegion function

Counts in region

Count reads per cell overlapping a given set of regions

CountsInRegion(object, assay, regions, ...)

Arguments

• object: A Seurat object
• assay: Name of a chromatin assay in the object to use
• regions: A GRanges object
• ...: Additional arguments passed to findOverlaps

Returns

Returns a numeric vector

Examples

CountsInRegion(
  object = atac_small,
  assay = 'bins',
  regions = blacklist_hg19
)