DensityScatter function

Scatterplot colored by point density

Create a scatterplot using variables in the object metadata and color cells by the density of points in the x-y space.

DensityScatter(object, x, y, log_x = FALSE, log_y = FALSE, quantiles = NULL)

Arguments

• object: A Seurat object
• x: Name of metadata variable to plot on x axis
• y: Name of metadata variable to plot on y axis
• log_x: log10 transform x values
• log_y: log10 transform y values
• quantiles: Vector of quantiles to display for x and y data distribution. Must be integer values between 0 and 100. TRUE can be passed as a shorthand way to set c(5, 10, 90, 95). If FALSE or NULL, no quantile information is displayed

Returns

Returns a ggplot object