DepthCor function

Plot sequencing depth correlation

Compute the correlation between total counts and each reduced dimension component.

DepthCor(object, assay = NULL, reduction = "lsi", n = 10, ...)

Arguments

• object: A Seurat object
• assay: Name of assay to use for sequencing depth. If NULL, use the default assay.
• reduction: Name of a dimension reduction stored in the input object
• n: Number of components to use. If NULL, use all components.
• ...: Additional arguments passed to cor

Returns

Returns a ggplot object

Examples

DepthCor(object = atac_small)